Pancreas

Baron

• Baron, M. et al. A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure. Cell Syst 3, 346–360.e4 (2016)

Accession	Protocol	Size	Scripts	Download	Report
GSE84133	inDrop	20125 features 8569 samples	bash R	SCESet	html

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Muraro

• Muraro, M. J. et al. A Single-Cell Transcriptome Atlas of the Human Pancreas. Cell Syst 3, 385–394.e3 (2016)

Note

Cell type annotations were obtained from Mauro Muraro on 02/03/17 and are stored here.

Accession	Protocol	Size	Scripts	Download	Report
GSE85241	CEL-Seq2	19140 features 2126 samples	bash R	SCESet	html

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Segerstolpe

• Segerstolpe, Å. et al. Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes. Cell Metab. 24, 593–607 (2016)

Accession	Protocol	Size	Scripts	Download	Report
E-MTAB-5061	Smart-Seq2	25525 features 3514 samples	bash R	SCESet	html

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Wang

• Wang, Y. J. et al. Single-Cell Transcriptomics of the Human Endocrine Pancreas. Diabetes 65, 3028–3038 (2016)

Warning

Read alignment and gene expression quantification in this data were performed using RNA-seq unified mapper (RUM). There are no zeros in the expression matrix (fpkm values) and the expression values are really large. Please take extra care when working with this dataset.

Accession	Protocol	Size	Scripts	Download	Report
GSE83139	SMARTer	19950 features 635 samples	bash R	SCESet	html

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Xin

• Xin, Y. et al. RNA Sequencing of Single Human Islet Cells Reveals Type 2 Diabetes Genes. Cell Metab. 24, 608–615 (2016)

Note

Cell type and genes annotations were obtained from Yurong Xin on 28/03/17 and are stored here and here .

Accession	Protocol	Size	Scripts	Download	Report
GSE81608	SMARTer	39851 features 1600 samples	bash R	SCESet	html