Retina

Macosko

• Macosko, E. Z. et al. Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets. Cell 161, 1202–1214 (2015)

• Supporting data

• Manual data

Note

Proper gene names were downloaded from Ensembl Biomart on 01/03/2017 and are stored here. Cell labels were downloaded from here on 22/02/2017 and are stored here.

Accession	Protocol	Size	Scripts	Download	Report
GSE63473	Drop-seq	23288 features 44808 samples	bash R	SCESet	html

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Shekhar

• Shekhar, K. et al. Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics. Cell 166, 1308–1323.e30 (2016)

• Supporting data

• Manual data

Note

To create a scater object we followed instructions from BCanalysis.pdf file. We did NOT perform the batch correction. Cell labels were downloaded from here on 22/02/2017 and are stored here.

Accession	Protocol	Size	Scripts	Download	Report
GSE81904	Drop-seq	13166 features 27499 samples	bash R	SCESet	html